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Oceanography and Marine Biology

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Book Series: Oceanography and Marine Biology : An Annual Review ISBN: 9780429026379 Year: Pages: 434 Language: English
Publisher: Taylor & Francis
Subject: Geology --- Earth Sciences
Added to DOAB on : 2019-09-11 11:21:03

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Oceanography and Marine Biology: An Annual Review remains one of the most cited sources in marine science and oceanography. The ever increasing interest in work in oceanography and marine biology and its relevance to global environmental issues, especially global climate change and its impacts, creates a demand for authoritative reviews summarizing the results of recent research. This volume covers topics that include resting cysts from coastal marine plankton, facilitation cascades in marine ecosystems, and the way that human activities are rapidly altering the sensory landscape and behaviour of marine animals.&#xD;&#xD;For more than 50 years, OMBAR has been an essential reference for research workers and students in all fields of marine science. From Volume 57 a new international Editorial Board ensures global relevance, with editors from the UK, Ireland, Canada, Australia and Singapore. The series volumes find a place in the libraries of not only marine laboratories and institutes, but also universities.&#xD;

H6 Biology and Ecology of the Globally Significant Kelp Ecklonia radiata (Book chapter)

Book title: Oceanography and Marine Biology

Authors: --- --- --- --- et al.
Book Series: Oceanography and Marine Biology : An Annual Review ISBN: 9780367134150 9780429026379 Year: Pages: 62 Language: English
Publisher: Taylor & Francis
Subject: Biology
Added to DOAB on : 2019-09-14 11:21:15
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Ecklonia radiata is one of the most widespread kelps globally, dominating temperate reefs throughout much of Australasia and southeastern Africa. Throughout much of its range, it is the only laminarian kelp and hence plays a key role in facilitating biodiversity and driving food webs, and it underpins immense ecological and socioeconomic values. This review synthesises the growing literature on E. radiata from its phylogeny and distribution through to its biology, ecology and recent changes. It provides an assessment of the state of knowledge and identifies gaps in our understanding of this important species. Despite being tolerant of a wide range of abiotic conditions, recent environmental change has caused direct and indirect loss of E. radiata forests, with extensive areas transitioning to turf and urchin barrens. Ongoing climate change may require application of multifaceted and novel strategies to increase its resistance and resilience to future conditions. By integrating variation across space, time and environmental change, this review provides a description of the current status and possible future trajectories of E. radiata forests.

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biology --- ecology --- kelp

Chapter 7 Cellular Control of Time, Size, and Shape in Development and Evolution (Book chapter)

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Book Series: Evolutionary Cell Biology ISBN: 9781315155968 9781498787864 Year: Pages: 48 Language: English
Publisher: Taylor & Francis
Subject: Biology
Added to DOAB on : 2019-01-17 11:44:13
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The rules by which anatomical size and shape are generated have intrigued scientists for centuries. In 1638, Galileo suggested a mathematical relationship between proportional changes in the shape of bones as animals increase in size, which he argued was a functional necessity for weight bearing (1914). The formalism of Galileo, whereby, physical forces and mathematical laws became integrated with studies of size and shape in biology, was most conspicuously encapsulated over a hundred years ago in the 1917 monumental tome by D’Arcy Thompson entitled, On Growth and Form (Thompson 1917). In a breathtakingly comprehensive manner, Thompson synthesized the observations of numerous predecessors and contemporaries, and through countless examples built a theoretical and experimental framework for describing changes in morphology that persists to this day (Stern and Emlen 1999; Arthur 2006).

Evolutionary Genomics

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Book Series: Methods in Molecular Biology ISBN: 9781493990740 Year: Pages: 780 DOI: 10.1007/978-1-4939-9074-0 Language: English
Publisher: Springer Nature
Subject: Biology
Added to DOAB on : 2020-01-29 11:21:11
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This open access book addresses the challenge of analyzing and understanding the evolutionary dynamics of complex biological systems at the genomic level, and elaborates on some promising strategies that would bring us closer to uncovering of the vital relationships between genotype and phenotype. After a few educational primers, the book continues with sections on sequence homology and alignment, phylogenetic methods to study genome evolution, methodologies for evaluating selective pressures on genomic sequences as well as genomic evolution in light of protein domain architecture and transposable elements, population genomics and other omics, and discussions of current bottlenecks in handling and analyzing genomic data. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of detail and expert implementation advice that lead to the best results. Authoritative and comprehensive, Evolutionary Genomics: Statistical and Computational Methods, Second Edition aims to serve both novices in biology with strong statistics and computational skills, and molecular biologists with a good grasp of standard mathematical concepts, in moving this important field of study forward.

Oceanography and Marine Biology

Authors: --- --- --- --- et al.
ISBN: 9780429454455 Year: Language: English
Publisher: Taylor & Francis
Subject: Geology --- Earth Sciences
Added to DOAB on : 2020-03-18 11:21:02

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oceanography; marine biology; marine science; global environment

Root Systems Biology

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Book Series: Frontiers Research Topics ISSN: 16648714 ISBN: 9782889192755 Year: Pages: 130 DOI: 10.3389/978-2-88919-275-5 Language: English
Publisher: Frontiers Media SA
Subject: Science (General) --- Botany --- General and Civil Engineering --- Biotechnology
Added to DOAB on : 2015-12-03 13:02:24
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The understanding of biological complexity has been greatly facilitated by cross-disciplinary, holistic approaches that allow insights into the function and regulation of biological processes that cannot be captured by dissecting them into their individual components. In addition, the development of novel tools has dramatically increased our ability to interrogate information at the nucleic acid, protein and metabolite level. The integration and interpretation of disparate data sets, however, still remain a major challenge in systems biology. Roots provide an excellent model for studying physiological, developmental, and metabolic processes. The availability of genetic resources, along with sequenced genomes has allowed important discoveries in root biochemistry, development and function. Roots are transparent, allowing optical investigation of gene activity in individual cells and experimental manipulation. In addition, the predictable fate of cells emerging from the root meristem and the continuous development of roots throughout the life of the plant, which permits simultaneous observation of different developmental stages, provide ideal premises for the analysis of growth and differentiation. Moreover, a genetically fixed cellular organization allows for studying the utilization of positional information and other non-cell-autonomous phenomena, which are of utmost importance in plant development. Although their ontogeny is largely invariant under standardized experimental conditions, roots possess an extraordinary capacity to respond to a plethora of environmental signals, resulting in distinct phenotypic readouts. This high phenotypic plasticity allows research into acclimative and adaptive strategies, the understanding of which is crucial for germplasm enhancement and crop improvement. With the aim of providing a current snapshot on the function and development of roots at the systems level, this Research Topic collated original research articles, methods articles, reviews, mini reviews and perspective, opinion and hypotheses articles that communicate breakthroughs in root biology, as well as recent advances in research technologies and data analysis.

Aflatoxins - Biochemistry and Molecular Biology

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ISBN: 9789533073958 Year: Pages: 480 DOI: 10.5772/896 Language: English
Publisher: IntechOpen
Subject: Biology
Added to DOAB on : 2019-10-03 07:51:48

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Aflatoxins - Biochemistry and Molecular Biology is a book that has been thought to present the most significant advances in these disciplines focused on the knowledge of such toxins. All authors, who supported the excellent work showed in every chapter of this book, are placed at the frontier of knowledge on this subject, thus, this book will be obligated reference to issue upon its publication. Finally, this book has been published in an attempt to present a written forum for researchers and teachers interested in the subject, having a current picture in this field of research about these interesting and intriguing toxins.

Foundations of Theoretical Approaches in Systems Biology

Authors: --- ---
Book Series: Frontiers Research Topics ISSN: 16648714 ISBN: 9782889456833 Year: Pages: 216 DOI: 10.3389/978-2-88945-683-3 Language: English
Publisher: Frontiers Media SA
Subject: Science (General) --- Biology
Added to DOAB on : 2019-01-23 14:53:43
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If biology in the 20th century was characterized by an explosion of new technologies and experimental methods, that of the 21st has seen an equally exuberant proliferation of mathematical and computational methods that attempt to systematize and explain the abundance of available data. As we live through the consolidation of a new paradigm where experimental data goes hand in hand with computational analysis, we contemplate the challenge of fusing these two aspects of the new biology into a consistent theoretical framework. Whether systems biology will survive as a field or be washed away by the tides of future fads will ultimately depend on its success to achieve this type of synthesis. The famous quote attributed to Kurt Lewin comes to mind: "there is nothing more practical than a good theory". This book presents a wide assortment of articles on systems biology in an attempt to capture the variety of current methods in systems biology and show how they can help to find answers to the challenges of modern biology.

Systems Biology of Transcription Regulation

Authors: --- ---
Book Series: Frontiers Research Topics ISSN: 16648714 ISBN: 9782889199679 Year: Pages: 189 DOI: 10.3389/978-2-88919-967-9 Language: English
Publisher: Frontiers Media SA
Subject: Science (General) --- Genetics --- Botany --- General and Civil Engineering --- Biotechnology
Added to DOAB on : 2016-01-19 14:05:46
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Transcription regulation is a complex process that can be considered and investigated from different perspectives. Traditionally and due to technical reasons (including the evolution of our understanding of the underlying processes) the main focus of the research was made on the regulation of expression through transcription factors (TFs), the proteins directly binding to DNA. On the other hand, intensive research is going on in the field of chromatin structure, remodeling and its involvement in the regulation. Whatever direction we select, we can speak about several levels of regulation. For instance, concentrating on TFs, we should consider multiple regulatory layers, starting with signaling pathways and ending up with the TF binding sites in the promoters and other regulatory regions. However, it is obvious that the TF regulation, also including the upstream processes, represents a modest portion of all processes leading to gene expression. For more comprehensive description of the gene regulation, we need a systematic and holistic view, which brings us to the importance of systems biology approaches.Advances in methodology, especially in high-throughput methods, result in an ever-growing mass of data, which in many cases is still waiting for appropriate consideration. Moreover, the accumulation of data is going faster than the development of algorithms for their systematic evaluation. Data and methods integration is indispensable for the acquiring a systematic as well as a systemic view. In addition to the huge amount of molecular or genetic components of a biological system, the even larger number of their interactions constitutes the enormous complexity of processes occurring in a living cell (organ, organism). In systems biology, these interactions are represented by networks. Transcriptional or, more generally, gene regulatory networks are being generated from experimental ChIPseq data, by reverse engineering from transcriptomics data, or from computational predictions of transcription factor (TF) – target gene relations. While transcriptional networks are now available for many biological systems, mathematical models to simulate their dynamic behavior have been successfully developed for metabolic and, to some extent, for signaling networks, but relatively rarely for gene regulatory networks. Systems biology approaches provide new perspectives that raise new questions. Some of them address methodological problems, others arise from the newly obtained understanding of the data. These open questions and problems are also a subject of this Research Topic.

Biological Ontologies and Semantic Biology

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Book Series: Frontiers Research Topics ISSN: 16648714 ISBN: 9782889192779 Year: Pages: 106 DOI: 10.3389/978-2-88919-277-9 Language: English
Publisher: Frontiers Media SA
Subject: Botany --- Biotechnology --- General and Civil Engineering --- Genetics --- Science (General)
Added to DOAB on : 2015-12-03 13:02:24
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As the amount of biological information and its diversity accumulates massively there is a critical need to facilitate the integration of this data to allow new and unexpected conclusions to be drawn from it. The Semantic Web is a new wave of web- based technologies that allows the linking of data between diverse data sets via standardised data formats (“big data”). Semantic Biology is the application of semantic web technology in the biological domain (including medical and health informatics). The Special Topic encompasses papers in this very broad area, including not only ontologies (development and applications), but also text mining, data integration and data analysis making use of the technologies of the Semantic Web. Ontologies are a critical requirement for such integration as they allow conclusions drawn about biological experiments, or descriptions of biological entities, to be understandable and integratable despite being contained in different databases and analysed by different software systems. Ontologies are the standard structures used in biology, and more broadly in computer science, to hold standardized terminologies for particular domains of knowledge. Ontologies consist of sets of standard terms, which are defined and may have synonyms for ease of searching and to accommodate different usages by different communities. These terms are linked by standard relationships, such as “is_a” (an eye “is_a” sense organ) or “part_of” (an eye is “part_of” a head). By linking terms in this way, more detailed, or granular, terms can be linked to broader terms, allowing computation to be carried out that takes these relationships into account.

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