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Genomics in Aquaculture to Better Understand Species Biology and Accelerate Genetic Progress

Authors: --- ---
Book Series: Frontiers Research Topics ISSN: 16648714 ISBN: 9782889199570 Year: Pages: 151 DOI: 10.3389/978-2-88919-957-0 Language: English
Publisher: Frontiers Media SA
Subject: Science (General) --- Genetics
Added to DOAB on : 2016-01-19 14:05:46
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From a global perspective aquaculture is an activity related to food production with large potential for growth. Considering a continuously growing population, the efficiency and sustainability of this activity will be crucial to meet the needs of protein for human consumption in the near future. However, for continuous enhancement of the culture of both fish and shellfish there are still challenges to overcome, mostly related to the biology of the cultured species and their interaction with (increasingly changing) environmental factors. Examples of these challenges include early sexual maturation, feed meal replacement, immune response to infectious diseases and parasites, and temperature and salinity tolerance. Moreover, it is estimated that less than 10% of the total aquaculture production in the world is based on populations genetically improved by means of artificial selection. Thus, there is considerable room for implementing breeding schemes aimed at improving productive traits having significant economic impact. By far the most economically relevant trait is growth rate, which can be efficiently improved by conventional genetic selection (i.e. based on breeding values of selection candidates). However, there are other important traits that cannot be measured directly on selection candidates, such as resistance against infectious and parasitic agents and carcass quality traits (e.g. fillet yield and meat color). However, these traits can be more efficiently improved using molecular tools to assist breeding programs by means of marker-assisted selection, using a few markers explaining a high proportion of the trait variation, or genomic selection, using thousands of markers to estimate genomic breeding values. The development and implementation of new technologies applied to molecular biology and genomics, such as next-generation sequencing methods and high-throughput genotyping platforms, are allowing the rapid increase of availability of genomic resources in aquaculture species. These resources will provide powerful tools to the research community and will aid in the determination of the genetic factors involved in several biological aspects of aquaculture species. In this regard, it is important to establish discussion in terms of which strategies will be more efficient to solve the primary challenges that are affecting aquaculture systems around the world. The main objective of this Research Topic is to provide a forum to communicate recent research and implementation strategies in the use of genomics in aquaculture species with emphasis on (1) a better understanding of fish and shellfish biological processes having considerable impact on aquaculture systems; and (2) the efficient incorporation of molecular information into breeding programs to accelerate genetic progress of economically relevant traits.

High-Pressure Studies of Crystalline Materials

ISBN: 9783038971313 9783038971320 Year: Pages: 330 DOI: 10.3390/books978-3-03897-132-0 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Chemistry (General) --- Mathematics --- Environmental Sciences
Added to DOAB on : 2018-09-20 10:13:12
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[This book is a printed edition of the Special Issue of Crystals: High-Pressure Studies of Crystalline Materials. It also includes additional articles published in Crystals and related to the topic of the Special Issue, which have been selected based upon their relevance and scientific quality.]

Titanium Dioxide Photocatalysis

Authors: ---
ISBN: 9783038976943 / 9783038976950 Year: Pages: 208 DOI: 10.3390/books978-3-03897-695-0 Language: eng
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Chemistry (General)
Added to DOAB on : 2019-06-26 08:44:06
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Although the seminal work of Fujishima et al. dates back to 1971, TiO2 still remains the most diffused and studied semiconductor, employed in photo-oxidation processes for cleantech (i.e., polluted water and air treatment), in solar fuel production (mainly hydrogen production by water photo splitting), and in Carbon Capture and Utilization (CCU) processes by CO2 photoreduction. The eleven articles, among them three reviews, in this book cover recent results and research trends of various aspects of titanium dioxide photocatalysis, with the chief aim of improving the final efficiency of TiO2-based materials. Strategies include doping, metal co-catalyst deposition, and the realization of composites with plasmonic materials, other semiconductors, and graphene. Photocatalysts with high efficiency and selectivity can be also obtained by controlling the precise crystal shape (and homogeneous size) and the organization in superstructures from ultrathin films to hierarchical nanostructures. Finally, the theoretical modeling of TiO2 nanoparticles is discussed and highlighted. The range of topics addressed in this book will stimulate the reader’s interest as well as provide a valuable source of information for researchers in academia and industry.

New Mineral Species and Their Crystal Structures

Authors: ---
ISBN: 9783038976882 Year: Pages: 204 DOI: 10.3390/books978-3-03897-689-9 Language: eng
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General)
Added to DOAB on : 2019-04-05 11:07:22
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One last comment concerns the fundamental contributions of Fourier analysis to quantum physics: Quantum mechanics and quantum field theory.

Keywords

ariegilatite --- nabimusaite group --- new mineral --- crystal structure --- intercalated hexagonal antiperovskite --- CO3-group --- Raman --- pyrometamorphic rocks --- Hatrurim Complex --- tiberiobardiite --- chalcophyllite group --- copper --- silicate --- sulfate --- Cretaio --- Tuscany --- Italy --- oyonite --- lillianite homologous series --- sulfosalt --- copper --- antimony --- arsenic --- Oyon district --- Lima department --- Peru --- fiemmeite --- new oxalate mineral --- Val di Fiemme --- Trentino --- Italy --- sharyginite --- new mineral --- crystal structure --- Raman spectroscopy --- Bellerberg volcano --- Germany --- kurchatovite --- clinokurchatovite --- crystal structure --- borate --- polymorphism --- polytypism --- structural complexity --- structural combinatorics --- configurational entropy --- least-action principle --- barioferrite --- crystal structure --- single-crystal investigation --- Raman --- Hatrurim Complex --- Rusinovite --- Raman spectroscopy --- pyrometamorphism --- stacking faults --- Shadil-Khokh volcano --- Bellerberg volcano --- aurihydrargyrumite --- Au6Hg5 phase --- gold --- placer --- self-electrorefining --- Ehime --- Japan --- cerromojonite --- selenium --- copper --- lead --- mercury --- bismuth --- sou?ekite --- bournonite group --- El Dragón --- Bolivia --- nöggerathite-(Ce) --- new mineral --- zirconolite --- laachite --- sanidinite --- crystal structure --- alkaline volcanic rock --- Laacher See --- Eifel --- parafiniukite --- apatite supergroup --- hedyphane group --- manganese --- calcium --- phosphorus --- Szklary pegmatite --- Lower Silesia --- Poland --- thermaerogenite --- cuprospinel --- gahnite --- magnesioferrite --- CuAl2O4 --- CuFe2O4 --- copper oxide --- new mineral --- spinel supergroup --- fumarole sublimate --- Tolbachik volcano --- Kamchatka --- verneite --- new mineral --- crystal structure --- Hekla --- Vesuvius --- Eldfell --- aluminofluoride

Polymeric Materials: Surfaces, Interfaces and Bioapplications

Authors: --- --- --- --- et al.
ISBN: 9783038979623 / 9783038979630 Year: Pages: 342 DOI: 10.3390/books978-3-03897-963-0 Language: eng
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Physics (General)
Added to DOAB on : 2019-06-26 08:44:06
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This book collects the articles published in the Special Issue “Polymeric Materials: Surfaces, Interfaces and Bioapplications”. It shows the advances in polymeric materials, which have tremendous applications in agricultural films, food packaging, dental restoration, antimicrobial systems, and tissue engineering. These polymeric materials are presented as films, coatings, particles, fibers, hydrogels, or networks. The potential to modify and modulate their surfaces or their content by different techniques, such as click chemistry, ozonation, breath figures, wrinkle formation, or electrospray, are also explained, taking into account the relationship between the structure and properties in the final application. Moreover, new trends in the development of such materials are presented, using more environmental friendly and safe methods, which, at the same time, have a high impact on our society.

Keywords

corn stalk fiber --- friction composite --- friction and wear --- worn surface morphology --- antifouling coatings --- biofouling --- natural biofilms --- single-stranded conformation polymorphism --- polydimethylsiloxane --- multidimensional scale analysis --- antimicrobial coatings --- porous surfaces --- breath figures --- antimicrobial polymer --- coatings --- hydrogel --- protein-repellent polymer --- surface-attached polymer network --- polymer cross-linking --- alginate modification --- calcium chloride --- microparticles --- spray drying --- prolonged drug release --- gradient wrinkles --- UV/ozone --- irradiance --- polymeric composites --- bonding agents --- antibacterial --- oral biofilms --- periodontal pathogens --- caries inhibition --- recycling --- polypropylene --- biodegradable polymers --- degradation --- inmiscibility --- hemicelluloses --- chitosan --- composite films --- oxygen barrier property --- food packaging --- nanosecond laser surface modification --- ABS (Acrylonitrile-Butadiene-Styrene) --- surface wettability --- superhydrophobic --- superhydrophilic --- poly(x-chlorostyrene) --- honeycomb --- breath figures --- conformational entropy --- spinal anatomy --- intervertebral disc --- degenerative disc disease --- herniated disc --- spinal fusion --- total disc replacement --- tissue engineering --- Electrically conductive polymers --- Electroactive biomaterials --- Electrical stimulation --- Smart composites --- Bioelectric effect --- Drug delivery --- Artificial muscle --- bio-based --- fossil --- hybrids --- blends --- packaging --- bio-based polymers --- antimicrobial --- biodegradable --- sustainable --- eco-friendly --- graphene oxide --- chitosan --- composites --- scaffolds --- tissue engineering --- surface modification/functionalization --- surface segregation --- micro- and nanopatterned films --- blends and (nano)composites --- coatings --- surface wettability --- stimuli-responsive materials/smart surfaces --- bioapplications

Evolution, Composition and Regulation of Supernumerary B Chromosomes

Authors: --- --- ---
ISBN: 9783038977865 / 9783038977872 Year: Pages: 254 DOI: 10.3390/books978-3-03897-787-2 Language: eng
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Biology
Added to DOAB on : 2019-08-28 11:21:28
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Supernumerary B chromosomes (Bs) are dispensable genetic elements found in thousands of species of plants and animals, and some fungi. Since their discovery more than a century ago, they have been a source of puzzlement, as they only occur in some members of a population and are absent from others. When they do occur, they are often harmful, and in the absence of “selfishness”, based on mechanisms of mitotic and meiotic drive, there appears to be no obvious reason for their existence. Cytogeneticists have long wrestled with questions about the biological existence of these enigmatic elements, including their lack of any adaptive properties, apparent absence of functional genes, their origin, sequence organization, and co-evolution as nuclear parasites. Emerging new technologies are now enabling researchers to step up a gear, to look enthusiastically beyond the previous limits of the horizon, and to uncover the secrets of these “silent” chromosomes. This book provides a comprehensive guide to theoretical advancements in the field of B chromosome research in both animal and plant systems.

Keywords

repetitive elements --- RNA-Seq --- genomics --- evolution --- cytogenetics --- supernumerary elements --- extra chromosomes --- B chromosomes --- transmission --- drive --- host/parasite interaction --- supernumerary chromosomes --- karyotype evolution --- genome instability --- supernumerary chromosomes --- heterochromatin --- parent-of-origin effects --- paternal X chromosome --- maternal X chromosome --- controlling element --- teleost --- population analysis --- whole genome resequencing --- DNA copy number variation --- ribosomal DNA --- B chromosomes --- FISH (fluorescence in situ hybridisation) --- GISH (genomic in situ hybridisation) --- Prospero autumnale complex --- supernumerary chromosomal segments (SCS) evolution --- tandem repeats --- Drosophila --- supernumerary --- satellite DNA --- sSMC --- B chromosomes --- dot-like (micro) Bs --- karyotypic characteristics --- ?s --- B morphotypes --- Apodemus peninsulae --- maize B chromosome --- centromere --- inactivation --- reactivation --- de novo centromere formation --- epigenetics --- supernumerary chromosomes --- additional chromosomes --- chromosome polymorphism --- evolution --- B chromosomes --- karyotypes --- genome evolution --- interphase nucleus --- mammals --- genes --- repetitive DNA --- transcription of heterochromatin --- B chromosomes --- grasshoppers --- DNA composition --- repeat clusters --- euchromatin degradation --- microdissected DNA probes --- B chromosome --- satellite DNA --- mobile element --- organelle DNA --- chromosome evolution --- fluorescent in situ hybridization --- Orthoptera --- satellite DNA --- supernumerary chromosome --- RepeatExplorer --- supernumerary chromosomes --- B chromosomes --- next-generation sequencing --- coverage ratio analysis --- n/a --- B chromosome --- transmission --- origin --- drive --- n/a

Plant Genetics and Molecular Breeding

Author:
ISBN: 9783039211753 / 9783039211760 Year: Pages: 628 DOI: 10.3390/books978-3-03921-176-0 Language: eng
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Biology
Added to DOAB on : 2019-08-28 11:21:27
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The development of new plant varieties is a long and tedious process involving the generation of large seedling populations for the selection of the best individuals. While the ability of breeders to generate large populations is almost unlimited, the selection of these seedlings is the main factor limiting the generation of new cultivars. Molecular studies for the development of marker-assisted selection (MAS) strategies are particularly useful when the evaluation of the character is expensive, time-consuming, or with long juvenile periods. The papers published in the Special Issue “Plant Genetics and Molecular Breeding” report highly novel results and testable new models for the integrative analysis of genetic (phenotyping and transmission of agronomic characters), physiology (flowering, ripening, organ development), genomic (DNA regions responsible for the different agronomic characters), transcriptomic (gene expression analysis of the characters), proteomic (proteins and enzymes involved in the expression of the characters), metabolomic (secondary metabolites), and epigenetic (DNA methylation and histone modifications) approaches for the development of new MAS strategies. These molecular approaches together with an increasingly accurate phenotyping will facilitate the breeding of new climate-resilient varieties resistant to abiotic and biotic stress, with suitable productivity and quality, to extend the adaptation and viability of the current varieties.

Keywords

sugarcane --- cry2A gene --- particle bombardment --- stem borer --- resistance --- NPK fertilizers --- agronomic traits --- molecular markers --- quantitative trait loci --- common wild rice --- Promoter --- Green tissue-specific expression --- light-induced --- transgenic chrysanthemum --- WRKY transcription factor --- salt stress --- gene expression --- DgWRKY2 --- Cucumis sativus L. --- RNA-Seq --- DEGs --- sucrose --- ABA --- drought stress --- Aechmea fasciata --- squamosa promoter binding protein-like --- flowering time --- plant architecture --- bromeliad --- Oryza sativa --- endosperm development --- rice quality --- WB1 --- the modified MutMap method --- abiotic stress --- Cicer arietinum --- candidate genes --- genetics --- heat-stress --- molecular breeding --- metallothionein --- Brassica --- Brassica napus --- As3+ stress --- broccoli --- cytoplasmic male sterile --- bud abortion --- gene expression --- transcriptome --- RNA-Seq --- sesame --- genome-wide association study --- yield --- QTL --- candidate gene --- cabbage --- yellow-green-leaf mutant --- recombination-suppressed region --- bulk segregant RNA-seq --- differentially expressed genes --- marker–trait association --- haplotype block --- genes --- root traits --- D-genome --- genotyping-by-sequencing --- single nucleotide polymorphism --- durum wheat --- bread wheat --- complex traits --- Brassica oleracea --- Ogura-CMS --- iTRAQ --- transcriptome --- pollen development --- rice --- OsCDPK1 --- seed development, starch biosynthesis --- endosperm appearance --- Chimonanthus praecox --- nectary --- floral scent --- gene expression --- Prunus --- flowering --- bisulfite sequencing --- genomics --- epigenetics --- breeding --- AP2/ERF genes --- Bryum argenteum --- transcriptome --- gene expression --- stress tolerance --- SmJMT --- transgenic --- Salvia miltiorrhiza --- overexpression --- transcriptome --- phenolic acids --- Idesia polycarpa var --- glycine --- FAD2 --- linoleic acid --- oleic acid --- anther wall --- tapetum --- pollen accumulation --- OsGPAT3 --- rice --- cytoplasmic male sterility (CMS) --- phytohormones --- differentially expressed genes --- pollen development --- Brassica napus --- Rosa rugosa --- RrGT2 gene --- Clone --- VIGS --- Overexpression --- Tobacco --- Flower color --- Anthocyanin --- sugarcane --- WRKY --- subcellular localization --- gene expression pattern --- protein-protein interaction --- transient overexpression --- soybean --- branching --- genome-wide association study (GWAS) --- near-isogenic line (NIL) --- BRANCHED1 (BRC1) --- TCP transcription factor --- Zea mays L. --- MADS transcription factor --- ZmES22 --- starch --- flowering time --- gene-by-gene interaction --- Hd1 --- Ghd7 --- rice --- yield trait --- Oryza sativa L. --- leaf shape --- yield trait --- molecular breeding --- hybrid rice --- nutrient use efficiency --- quantitative trait loci (QTLs), molecular markers --- agronomic efficiency --- partial factor productivity --- P. suffruticosa --- R2R3-MYB --- overexpression --- anthocyanin --- transcriptional regulation --- ethylene-responsive factor --- Actinidia deliciosa --- AdRAP2.3 --- gene expression --- waterlogging stress --- regulation --- Chrysanthemum morifolium --- WUS --- CYC2 --- gynomonoecy --- reproductive organ --- flower symmetry --- Hs1pro-1 --- cZR3 --- gene pyramiding --- Heterodera schachtii --- resistance --- tomato --- Elongated Internode (EI) --- QTL --- GA2ox7 --- n/a

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