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Systems Analytics and Integration of Big Omics Data

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ISBN: 9783039287444 / 9783039287451 Year: Pages: 202 DOI: 10.3390/books978-3-03928-745-1 Language: eng
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Medicine (General) --- Therapeutics
Added to DOAB on : 2020-06-09 16:38:57
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Abstract

A “genotype"" is essentially an organism's full hereditary information which is obtained from its parents. A ""phenotype"" is an organism's actual observed physical and behavioral properties. These may include traits such as morphology, size, height, eye color, metabolism, etc. One of the pressing challenges in computational and systems biology is genotype-to-phenotype prediction. This is challenging given the amount of data generated by modern Omics technologies. This “Big Data” is so large and complex that traditional data processing applications are not up to the task. Challenges arise in collection, analysis, mining, sharing, transfer, visualization, archiving, and integration of these data. In this Special Issue, there is a focus on the systems-level analysis of Omics data, recent developments in gene ontology annotation, and advances in biological pathways and network biology. The integration of Omics data with clinical and biomedical data using machine learning is explored. This Special Issue covers new methodologies in the context of gene–environment interactions, tissue-specific gene expression, and how external factors or host genetics impact the microbiome.

Keywords

tissue-specific expressed genes --- transcriptome --- tissue classification --- support vector machine --- feature selection --- bioinformatics pipelines --- algorithm development for network integration --- miRNA–gene expression networks --- multiomics integration --- network topology analysis --- candidate genes --- gene–environment interactions --- logic forest --- systemic lupus erythematosus --- Gene Ontology --- KEGG pathways --- enrichment analysis --- proteomic analysis --- plot visualization --- Alzheimer’s disease --- dementia --- cognitive impairment --- neurodegeneration --- Gene Ontology --- annotation --- biocuration --- amyloid-beta --- microtubule-associated protein tau --- artificial intelligence --- genotype --- phenotype --- deep phenotype --- data integration --- genomics --- phenomics --- precision medicine informatics --- epigenetics --- chromatin modification --- sequencing --- regulatory genomics --- disease variants --- machine learning --- multi-omics --- data integration --- curse of dimensionality --- heterogeneous data --- missing data --- class imbalance --- scalability --- genomics --- pharmacogenomics --- cell lines --- database --- drug sensitivity --- data integration --- omics data --- genomics --- RNA expression --- non-omics data --- clinical data --- epidemiological data --- challenges --- integrative analytics --- joint modeling --- multivariate analysis --- multivariate causal mediation --- distance correlation --- direct effect --- indirect effect --- causal inference --- n/a

Learning to Understand Remote Sensing Images

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ISBN: 9783038976844 9783038976851 Year: Volume: 1 Pages: 426 DOI: 10.3390/books978-3-03897-685-1 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Computer Science
Added to DOAB on : 2019-12-09 11:49:15
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With the recent advances in remote sensing technologies for Earth observation, many different remote sensors are collecting data with distinctive properties. The obtained data are so large and complex that analyzing them manually becomes impractical or even impossible. Therefore, understanding remote sensing images effectively, in connection with physics, has been the primary concern of the remote sensing research community in recent years. For this purpose, machine learning is thought to be a promising technique because it can make the system learn to improve itself. With this distinctive characteristic, the algorithms will be more adaptive, automatic, and intelligent. This book introduces some of the most challenging issues of machine learning in the field of remote sensing, and the latest advanced technologies developed for different applications. It integrates with multi-source/multi-temporal/multi-scale data, and mainly focuses on learning to understand remote sensing images. Particularly, it presents many more effective techniques based on the popular concepts of deep learning and big data to reach new heights of data understanding. Through reporting recent advances in the machine learning approaches towards analyzing and understanding remote sensing images, this book can help readers become more familiar with knowledge frontier and foster an increased interest in this field.

Keywords

hyperspectral image classification --- SELF --- SVMs --- Segment-Tree Filtering --- multi-sensor --- change feature analysis --- object-based --- multispectral images --- heterogeneous domain adaptation --- transfer learning --- multi-view canonical correlation analysis ensemble --- semi-supervised learning --- canonical correlation weighted voting --- ensemble learning --- image classification --- spatial attraction model (SAM) --- subpixel mapping (SPM) --- land cover --- mixed pixel --- spatial distribution --- hard classification --- building damage detection --- Fuzzy-GA decision making system --- machine learning techniques --- optical remotely sensed images --- sensitivity analysis --- texture analysis --- quality assessment --- ratio images --- Synthetic Aperture Radar (SAR) --- speckle --- speckle filters --- ice concentration --- SAR imagery --- convolutional neural network --- urban surface water extraction --- threshold stability --- sub-pixel --- linear spectral unmixing --- Landsat imagery --- image registration --- image fusion --- UAV --- metadata --- visible light and infrared integrated camera --- semantic segmentation --- CNN --- deep learning --- ISPRS --- remote sensing --- gate --- hyperspectral image --- sparse and low-rank graph --- tensor --- dimensionality reduction --- semantic labeling --- convolution neural network --- fully convolutional network --- sea-land segmentation --- ship detection --- hyperspectral image --- target detection --- multi-task learning --- sparse representation --- locality information --- remote sensing image correction --- color matching --- optimal transport --- CNN --- very high resolution images --- segmentation --- multi-scale clustering --- vehicle localization --- vehicle classification --- high resolution --- aerial image --- convolutional neural network (CNN) --- class imbalance --- deep learning --- convolutional neural network (CNN) --- fully convolutional network (FCN) --- classification --- remote sensing --- high resolution --- semantic segmentation --- deep convolutional neural networks --- manifold ranking --- single stream optimization --- high resolution image --- feature extraction --- hypergraph learning --- morphological profiles --- hyperedge weight estimation --- semantic labeling --- convolutional neural networks --- remote sensing --- deep learning --- aerial images --- hyperspectral image --- feature extraction --- dimensionality reduction --- optimized kernel minimum noise fraction (OKMNF) --- hyperspectral remote sensing --- endmember extraction --- multi-objective --- particle swarm optimization --- image alignment --- feature matching --- geostationary satellite remote sensing image --- GSHHG database --- Hough transform --- dictionary learning --- road detection --- Radon transform --- geo-referencing --- multi-sensor image matching --- Siamese neural network --- satellite images --- synthetic aperture radar --- inundation mapping --- flood --- optical sensors --- spatiotemporal context learning --- Modest AdaBoost --- HJ-1A/B CCD --- GF-4 PMS --- hyperspectral image classification --- automatic cluster number determination --- adaptive convolutional kernels --- hyperspectral imagery --- 1-dimensional (1-D) --- Convolutional Neural Network (CNN) --- Support Vector Machine (SVM) --- Random Forests (RF) --- machine learning --- deep learning --- TensorFlow --- multi-seasonal --- regional land cover --- saliency analysis --- remote sensing --- ROI detection --- hyperparameter sparse representation --- dictionary learning --- energy distribution optimizing --- multispectral imagery --- nonlinear classification --- kernel method --- dimensionality expansion --- deep convolutional neural networks --- road segmentation --- conditional random fields --- satellite images --- aerial images --- THEOS --- land cover change --- downscaling --- sub-pixel change detection --- machine learning --- MODIS --- Landsat --- very high resolution (VHR) satellite image --- topic modelling --- object-based image analysis --- image segmentation --- unsupervised classification --- multiscale representation --- GeoEye-1 --- wavelet transform --- fuzzy neural network --- remote sensing --- conservation --- urban heat island --- land surface temperature --- climate change --- land use --- land cover --- Landsat --- remote sensing --- SAR image --- despeckling --- dilated convolution --- skip connection --- residual learning --- scene classification --- saliency detection --- deep salient feature --- anti-noise transfer network --- DSFATN --- infrared image --- image registration --- MSER --- phase congruency --- hashing --- remote sensing image retrieval --- online learning --- hyperspectral image --- compressive sensing --- structured sparsity --- tensor sparse decomposition --- tensor low-rank approximation

Learning to Understand Remote Sensing Images

Author:
ISBN: 9783038976981 9783038976998 Year: Volume: 2 Pages: 376 DOI: 10.3390/books978-3-03897-699-8 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Computer Science
Added to DOAB on : 2019-12-09 11:49:15
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Abstract

With the recent advances in remote sensing technologies for Earth observation, many different remote sensors are collecting data with distinctive properties. The obtained data are so large and complex that analyzing them manually becomes impractical or even impossible. Therefore, understanding remote sensing images effectively, in connection with physics, has been the primary concern of the remote sensing research community in recent years. For this purpose, machine learning is thought to be a promising technique because it can make the system learn to improve itself. With this distinctive characteristic, the algorithms will be more adaptive, automatic, and intelligent. This book introduces some of the most challenging issues of machine learning in the field of remote sensing, and the latest advanced technologies developed for different applications. It integrates with multi-source/multi-temporal/multi-scale data, and mainly focuses on learning to understand remote sensing images. Particularly, it presents many more effective techniques based on the popular concepts of deep learning and big data to reach new heights of data understanding. Through reporting recent advances in the machine learning approaches towards analyzing and understanding remote sensing images, this book can help readers become more familiar with knowledge frontier and foster an increased interest in this field.

Keywords

hyperspectral image classification --- SELF --- SVMs --- Segment-Tree Filtering --- multi-sensor --- change feature analysis --- object-based --- multispectral images --- heterogeneous domain adaptation --- transfer learning --- multi-view canonical correlation analysis ensemble --- semi-supervised learning --- canonical correlation weighted voting --- ensemble learning --- image classification --- spatial attraction model (SAM) --- subpixel mapping (SPM) --- land cover --- mixed pixel --- spatial distribution --- hard classification --- building damage detection --- Fuzzy-GA decision making system --- machine learning techniques --- optical remotely sensed images --- sensitivity analysis --- texture analysis --- quality assessment --- ratio images --- Synthetic Aperture Radar (SAR) --- speckle --- speckle filters --- ice concentration --- SAR imagery --- convolutional neural network --- urban surface water extraction --- threshold stability --- sub-pixel --- linear spectral unmixing --- Landsat imagery --- image registration --- image fusion --- UAV --- metadata --- visible light and infrared integrated camera --- semantic segmentation --- CNN --- deep learning --- ISPRS --- remote sensing --- gate --- hyperspectral image --- sparse and low-rank graph --- tensor --- dimensionality reduction --- semantic labeling --- convolution neural network --- fully convolutional network --- sea-land segmentation --- ship detection --- hyperspectral image --- target detection --- multi-task learning --- sparse representation --- locality information --- remote sensing image correction --- color matching --- optimal transport --- CNN --- very high resolution images --- segmentation --- multi-scale clustering --- vehicle localization --- vehicle classification --- high resolution --- aerial image --- convolutional neural network (CNN) --- class imbalance --- deep learning --- convolutional neural network (CNN) --- fully convolutional network (FCN) --- classification --- remote sensing --- high resolution --- semantic segmentation --- deep convolutional neural networks --- manifold ranking --- single stream optimization --- high resolution image --- feature extraction --- hypergraph learning --- morphological profiles --- hyperedge weight estimation --- semantic labeling --- convolutional neural networks --- remote sensing --- deep learning --- aerial images --- hyperspectral image --- feature extraction --- dimensionality reduction --- optimized kernel minimum noise fraction (OKMNF) --- hyperspectral remote sensing --- endmember extraction --- multi-objective --- particle swarm optimization --- image alignment --- feature matching --- geostationary satellite remote sensing image --- GSHHG database --- Hough transform --- dictionary learning --- road detection --- Radon transform --- geo-referencing --- multi-sensor image matching --- Siamese neural network --- satellite images --- synthetic aperture radar --- inundation mapping --- flood --- optical sensors --- spatiotemporal context learning --- Modest AdaBoost --- HJ-1A/B CCD --- GF-4 PMS --- hyperspectral image classification --- automatic cluster number determination --- adaptive convolutional kernels --- hyperspectral imagery --- 1-dimensional (1-D) --- Convolutional Neural Network (CNN) --- Support Vector Machine (SVM) --- Random Forests (RF) --- machine learning --- deep learning --- TensorFlow --- multi-seasonal --- regional land cover --- saliency analysis --- remote sensing --- ROI detection --- hyperparameter sparse representation --- dictionary learning --- energy distribution optimizing --- multispectral imagery --- nonlinear classification --- kernel method --- dimensionality expansion --- deep convolutional neural networks --- road segmentation --- conditional random fields --- satellite images --- aerial images --- THEOS --- land cover change --- downscaling --- sub-pixel change detection --- machine learning --- MODIS --- Landsat --- very high resolution (VHR) satellite image --- topic modelling --- object-based image analysis --- image segmentation --- unsupervised classification --- multiscale representation --- GeoEye-1 --- wavelet transform --- fuzzy neural network --- remote sensing --- conservation --- urban heat island --- land surface temperature --- climate change --- land use --- land cover --- Landsat --- remote sensing --- SAR image --- despeckling --- dilated convolution --- skip connection --- residual learning --- scene classification --- saliency detection --- deep salient feature --- anti-noise transfer network --- DSFATN --- infrared image --- image registration --- MSER --- phase congruency --- hashing --- remote sensing image retrieval --- online learning --- hyperspectral image --- compressive sensing --- structured sparsity --- tensor sparse decomposition --- tensor low-rank approximation

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